Methods, Fluorophores, and Review

  • Chem Phys Lipids. 1992 Oct;62(3):269-80. Detection of protein mediated glycosphingolipid clustering by the use of resonance energy transfer between fluorescent labelled lipids. A method established by applying the system ganglioside GM1 and cholera toxin B subunit. Antes P, Schwarzmann G, Sandhoff K.
  • Anal Biochem. 1994 Apr;218(1):1-13. Resonance energy transfer: methods and applications. Wu P, Brand L.
  • Proc Natl Acad Sci U S A. 1996 Jun 25;93(13):6264-8. Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor. Ha T, Enderle T, Ogletree DF, Chemla DS, Selvin PR, Weiss S.
  • Eur Biophys J. 1998;27(4):377-89. Intensity-based energy transfer measurements in digital imaging microscopy. Nagy P, V¦Ámosi G, Bodn¦Ár A, Lockett SJ, Sz¦Õll¦Õsi J.
  • Biophys J. 1998 May;74(5):2702-13. Quantitative fluorescence resonance energy transfer measurements using fluorescence microscopy. Gordon GW, Berry G, Liang XH, Levine B, Herman B.
  • Trends Cell Biol. 1999 Feb;9(2):48-52. Fluorescence lifetime imaging microscopy: spatial resolution of biochemical processes in the cell. Bastiaens PI, Squire A.
  • Sci STKE. 2000 Jun 27;2000(38):pl1. Measurement of molecular interactions in living cells by fluorescence resonance energy transfer between variants of the green fluorescent protein. Siegel RM, Chan FK, Zacharias DA, Swofford R, Holmes KL, Tsien RY, Lenardo MJ.
  • Curr Protoc Protein Sci. 2001 May;Chapter 19:Unit19.5. Imaging protein-protein interactions by fluorescence resonance energy transfer (FRET) microscopy. Wouters FS, Bastiaens PI.
  • Curr Opin Pharmacol. 2001 Oct;1(5):521-5. Fluorescent imaging in living systems. Emptage NJ.
  • Biophys J. 2001 Oct;81(4):2395-402. Reliable and global measurement of fluorescence resonance energy transfer using fluorescence microscopes. Xia Z, Liu Y.
  • Methods. 2001 Sep;25(1):4-18. Fluorescence resonance energy transfer microscopy of localized protein interactions in the living cell nucleus. Day RN, Periasamy A, Schaufele F.
  • J Biomed Opt. 2001 Jul;6(3):287-91. Fluorescence resonance energy transfer microscopy: a mini review. Periasamy A.
  • Eur J Neurosci. 2001 Jun;13(12):2314-8. Design and characterization of a DNA-encoded, voltage-sensitive fluorescent protein. Sakai R, Repunte-Canonigo V, Raj CD, Kn¦Õpfel T.
  • Nat Biotechnol. 2001 Jul;19(7):645-9. Multiphoton-evoked color change of DsRed as an optical highlighter for cellular and subcellular labeling. Marchant JS, Stutzmann GE, Leissring MA, LaFerla FM, Parker I.
  • Methods. 2001 Jul;24(3):289-96. Imaging protein-protein interactions using fluorescence resonance energy transfer microscopy. Kenworthy AK.
  • J Exp Bot. 2001 Apr;52(356):529-39. GFP imaging: methodology and application to investigate cellular compartmentation in plants. Hanson MR, K¦Õhler RH.
  • Biochemistry. 2001 Feb 27;40(8):2502-10. Red fluorescent protein from Discosoma as a fusion tag and a partner for fluorescence resonance energy transfer. Mizuno H, Sawano A, Eli P, Hama H, Miyawaki A.
  • Nat Biotechnol. 2001 Feb;19(2):167-9. Imaging FRET between spectrally similar GFP molecules in single cells. Harpur AG, Wouters FS, Bastiaens PI.
  • Curr Opin Struct Biol. 2001 Oct;11(5):573-8. The use of FRET imaging microscopy to detect protein-protein interactions and protein conformational changes in vivo. Truong K, Ikura M.
  • Biophys J. 2001 Jun;80(6):3000-8. Homo-FRET microscopy in living cells to measure monomer-dimer transition of GFP-tagged proteins. Gautier I, Tramier M, Durieux C, Coppey J, Pansu RB, Nicolas JC, Kemnitz K, Coppey-Moisan M.
  • Plant Mol Biol. 2002 Dec;50(6):871-83. Imaging protein-protein interactions in living cells. Hink MA, Bisselin T, Visser AJ.
  • Cell Struct Funct. 2002 Oct;27(5):367-74. Multispectral imaging fluorescence microscopy for living cells. Hiraoka Y, Shimi T, Haraguchi T.
  • Cell Struct Funct. 2002 Oct;27(5):333-4. Live cell imaging: approaches for studying protein dynamics in living cells. Haraguchi T.
  • Biophys J. 2002 Dec;83(6):3652-64. Fluorescence resonance energy transfer-based stoichiometry in living cells. Hoppe A, Christensen K, Swanson JA.
  • Biophys J. 2002 Dec;83(6):3570-7. Picosecond-hetero-FRET microscopy to probe protein-protein interactions in live cells. Tramier M, Gautier I, Piolot T, Ravalet S, Kemnitz K, Coppey J, Durieux C, Mignotte V, Coppey-Moisan M.
  • Nat Rev Mol Cell Biol. 2002 Dec;3(12):906-18. Creating new fluorescent probes for cell biology. Zhang J, Campbell RE, Ting AY, Tsien RY.
  • J Biomed Opt. 2002 Oct;7(4):555-60. Excitation ratiometric fluorescent biosensor for zinc ion at picomolar levels. Thompson RB, Cramer ML, Bozym R.
  • Genes Cells. 2002 Sep;7(9):881-7. Spectral imaging fluorescence microscopy. Haraguchi T, Shimi T, Koujin T, Hashiguchi N, Hiraoka Y.
  • Methods. 2002 Aug;27(4):340-8. Photobleaching fluorescence resonance energy transfer reveals ligand-induced oligomer formation of human somatostatin receptor subtypes. Patel RC, Lange DC, Patel YC.
  • Biophys J. 2002 Sep;83(3):1631-49. Dynamic fluorescence anisotropy imaging microscopy in the frequency domain (rFLIM). Clayton AH, Hanley QS, Arndt-Jovin DJ, Subramaniam V, Jovin TM.
  • Anal Chem. 2002 Jul 15;74(14):3511-7. High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy. Heilemann M, Herten DP, Heintzmann R, Cremer C, Muller C, Tinnefeld P, Weston KD, Wolfrum J, Sauer M.
  • Biophys J. 2002 Jul;83(1):407-15. Spectroscopy of single phycoerythrocyanin monomers: dark state identification and observation of energy transfer heterogeneities. Zehetmayer P, Hellerer T, Parbel A, Scheer H, Zumbusch A.
  • Drug Discov Today. 2003 Dec 1;8(23):1085-93. Confocal optics microscopy for biochemical and cellular high-throughput screening. Zemanov¦Á L, Schenk A, Valler MJ, Nienhaus GU, Heilker R.
  • Pharmacol Ther. 2003 Nov;100(2):101-18. Fluorescent ligands, antibodies, and proteins for the study of receptors. Daly CJ, McGrath JC.
  • Nat Biotechnol. 2003 Nov;21(11):1387-95. FRET imaging. Jares-Erijman EA, Jovin TM.
  • Curr Opin Chem Biol. 2003 Oct;7(5):635-40. Analysis of protein interactions using fluorescence technologies. Yan Y, Marriott G.
  • Sci STKE. 2003 Oct 21;2003(205):tr5. Monitoring signaling processes in living cells using biosensors. Hahn K.
  • Biochem Soc Trans. 2003 Oct;31(Pt 5):1020-7. Imaging molecular interactions in cells by dynamic and static fluorescence anisotropy (rFLIM and emFRET). Lidke DS, Nagy P, Barisas BG, Heintzmann R, Post JN, Lidke KA, Clayton AH, Arndt-Jovin DJ, Jovin TM.
  • Cytometry A. 2003 Oct;55(2):71-85. A flow cytometric method to detect protein-protein interaction in living cells by directly visualizing donor fluorophore quenching during CFP-->YFP fluorescence resonance energy transfer (FRET). He L, Olson DP, Wu X, Karpova TS, McNally JG, Lipsky PE.
  • Cancer Res. 2003 Sep 1;63(17):5194-7. Fluorescence resonance energy transfer reveals a binding site of a photosensitizer for photodynamic therapy. Morris RL, Azizuddin K, Lam M, Berlin J, Nieminen AL, Kenney ME, Samia AC, Burda C, Oleinick NL.
  • J Biomed Opt. 2003 Jul;8(3):368-75. Fluorescence resonance energy transfer determinations using multiphoton fluorescence lifetime imaging microscopy to characterize amyloid-beta plaques. Bacskai BJ, Skoch J, Hickey GA, Allen R, Hyman BT.
  • J Biomed Opt. 2003 Jul;8(3):362-7. Quantitative imaging of protein-protein interactions by multiphoton fluorescence lifetime imaging microscopy using a streak camera. Krishnan RV, Masuda A, Centonze VE, Herman B.
  • J Biomed Opt. 2003 Jul;8(3):357-61. Spectroscopic approach for monitoring two-photon excited fluorescence resonance energy transfer from homodimers at the subcellular level. LaMorte VJ, Zoumi A, Tromberg BJ.
  • J Biomed Opt. 2003 Jul;8(3):347-56. Illuminating protein interactions in tissue using confocal and two-photon excitation fluorescent resonance energy transfer microscopy. Mills JD, Stone JR, Rubin DG, Melon DE, Okonkwo DO, Periasamy A, Helm GA.
  • J Biomed Opt. 2003 Jul;8(3):339-46. One- and two-photon fluorescence resonance energy transfer microscopy to establish a clustered distribution of receptor-ligand complexes in endocytic membranes. Wallrabe H, Stanley M, Periasamy A, Barroso M.
  • Scanning. 2003 May-Jun;25(3):116-20. Spectra and lifetimes of fluorescence resonance energy transfer fluorophores under two-photon excitation. Ashman R, Crimeen-Irwin B, Ludford-Menting M, Russell S, Gu M.
  • J Microsc. 2003 Jul;211(Pt 1):19-29. Variable-angle total internal reflection fluorescence microscopy (VA-TIRFM): realization and application of a compact illumination device. Stock K, Sailer R, Strauss WS, Lyttek M, Steiner R, Schneckenburger H.
  • Biophys J. 2003 Jul;85(1):599-611. DsRed as a potential FRET partner with CFP and GFP. Erickson MG, Moon DL, Yue DT.
  • FEBS Lett. 2003 Jul 3;546(1):87-92. Spectral imaging and its applications in live cell microscopy. Zimmermann T, Rietdorf J, Pepperkok R.
  • Curr Opin Nephrol Hypertens. 2003 Jul;12(4):455-61. Novel light microscopy imaging techniques in nephrology. Bacallao RL, Yu W, Dunn KW, Phillips CL. 
  • Biophys J. 2003 Jun;84(6):4053-61. Single molecule detection of DNA looping by NgoMIV restriction endonuclease. Katiliene Z, Katilius E, Woodbury NW.
  • Cytometry A. 2003 May;53(1):39-54. Flow cytometric measurement of fluorescence (F¦Õrster) resonance energy transfer from cyan fluorescent protein to yellow fluorescent protein using single-laser excitation at 458 nm. He L, Bradrick TD, Karpova TS, Wu X, Fox MH, Fischer R, McNally JG, Knutson JR, Grammer AC, Lipsky PE.
  • Nat Mater. 2003 Apr;2(4):210-1. Nanoparticle waveguides: Watching energy transfer. Krenn JR.
  • Science. 2003 Apr 4;300(5616):82-6. Light microscopy techniques for live cell imaging. Stephens DJ, Allan VJ.
  • J Cell Biol. 2003 Mar 3;160(5):629-33. Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations. Sekar RB, Periasamy A.
  • Annu Rev Biophys Biomol Struct. 2003;32:161-82. Epub 2003 Feb 11. The power and prospects of fluorescence microscopies and spectroscopies. Michalet X, Kapanidis AN, Laurence T, Pinaud F, Doose S, Pflughoefft M, Weiss S.
  • Ann Anat. 2003 Jan;185(1):1-20. Modern laser scanning microscopy in biology, biotechnology and medicine. Halbhuber KJ, K¦Õnig K.
  • Cytometry A. 2003 Mar;52(1):1-11. Quantitative image analysis of cellular protein translocation induced by magnetic microspheres: application to the EGF receptor. Brock R, Jovin TM.
  • Methods. 2003 Jan;29(1):58-73. Characterization of one- and two-photon excitation fluorescence resonance energy transfer microscopy. Elangovan M, Wallrabe H, Chen Y, Day RN, Barroso M, Periasamy A.
  • J Microsc. 2003 Jan;209(Pt 1):56-70. Fluorescence resonance energy transfer from cyan to yellow fluorescent protein detected by acceptor photobleaching using confocal microscopy and a single laser. Karpova TS, Baumann CT, He L, Wu X, Grammer A, Lipsky P, Hager GL, McNally JG.
  • J Microsc. 2003 Jan;209(Pt 1):1-7. Evaluation of global analysis algorithms for single frequency fluorescence lifetime imaging microscopy data. Verveer PJ, Bastiaens PI.
  • Biophys J. 2003 Jan;84(1):612-22. Simultaneous optical and electrical recording of single gramicidin channels. Borisenko V, Lougheed T, Hesse J, Fόreder-Kitzmόller E, Fertig N, Behrends JC, Woolley GA, Schόtz GJ.
  • Curr Protoc Cell Biol. 2004 Dec;Chapter 4:Unit 4.14. Fluorescence lifetime imaging microscopy. Esposito A, Wouters FS.
  • Nat Methods. 2004 Dec;1(3):209-17. Epub 2004 Nov 18. Three-chromophore FRET microscopy to analyze multiprotein interactions in living cells. Galperin E, Verkhusha VV, Sorkin A.
  • Microsc Res Tech. 2004 Nov;65(4-5):169-79. Ensemble and single particle photophysical properties (two-photon excitation, anisotropy, FRET, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells. Grecco HE, Lidke KA, Heintzmann R, Lidke DS, Spagnuolo C, Martinez OE, Jares-Erijman EA, Jovin TM.
  • Photochem Photobiol Sci. 2005 Jan;4(1):13-22. Epub 2004 Nov 11. Time-resolved fluorescence microscopy. Suhling K, French PM, Phillips D.
  • Biophys J. 2005 Feb;88(2):L14-6. Epub 2004 Dec 21. High-contrast imaging of fluorescent protein FRET by fluorescence polarization microscopy. Rizzo MA, Piston DW.
  • Biophys J. 2005 Feb;88(2):1444-57. Epub 2004 Nov 19. Improved "optical highlighter" probes derived from discosoma red fluorescent protein. Robinson LC, Marchant JS.
  • Biophys J. 2005 Feb;88(2):1224-37. Epub 2004 Nov 5. Multiphoton-FLIM quantification of the EGFP-mRFP1 FRET pair for localization of membrane receptor-kinase interactions.  
  • Cell Biochem Biophys. 2004;41(3):391-414. Optical techniques for imaging membrane topography. Parthasarathy R, Groves JT.
  • Nat Biotechnol. 2004 Nov;22(11):1435-9. Epub 2004 Oct 24.  Photoswitchable cyan fluorescent protein for protein tracking. Chudakov DM, Verkhusha VV, Staroverov DB, Souslova EA, Lukyanov S, Lukyanov KA.
  • Biophys J. 2004 Oct;87(4):2787-97. Polarized fluorescence resonance energy transfer microscopy. Mattheyses AL, Hoppe AD, Axelrod D.
  • Int Rev Cytol. 2004;237:205-77. Visualization of molecular activities inside living cells with fluorescent labels. Bunt G, Wouters FS.
  • Microsc Res Tech. 2004 Jun 1;64(2):185-95. Applying spectral fingerprinting to the analysis of FRET images. Neher RA, Neher E.
  • J Microsc. 2004 Aug;215(Pt 2):162-73. Quantitative fluorescence resonance energy transfer (FRET) measurement with acceptor photobleaching and spectral unmixing. Gu Y, Di WL, Kelsell DP, Zicha D.
  • Philos Transact A Math Phys Eng Sci. 2004 Apr 15;362(1817):901-19. Fluorescence resonance energy transfer scanning near-field optical microscopy. Sekatskii SK.
  • Biophys J. 2004 Aug;87(2):1360-8. Na/K pump-induced [Na](i) gradients in rat ventricular myocytes measured with two-photon microscopy. Despa S, Kocksk¦Ämper J, Blatter LA, Bers DM.
  • Biophys J. 2004 Aug;87(2):1328-37. Single-molecule three-color FRET. Hohng S, Joo C, Ha T.
  • Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11298-303. Epub 2004 Jul 26. Nanometer-localized multiple single-molecule fluorescence microscopy. Qu X, Wu D, Mets L, Scherer NF.
  • J Chem Phys. 2004 Jun 15;120(23):10867-70. Three-dimensional orientational colocalization of individual donor--acceptor pairs. Hubner CG, Ksenofontov V, Nolde F, Mullen K, Basche T.
  • Proc Natl Acad Sci U S A. 2004 Jul 20;101(29):10554-9. Epub 2004 Jul 9. Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins. Nagai T, Yamada S, Tominaga T, Ichikawa M, Miyawaki A.
  • Opt Lett. 2004 Jun 15;29(12):1354-6. Two-color two-photon 4Pi fluorescence microscopy.Eur Biophys J. 2005 Feb;34(1):82-90. Epub 2004 Jun 30. Dual-channel photobleaching FRET microscopy for improved resolution of protein association states in living cells.
  •   Clayton AH, Klonis N, Cody SH, Nice EC. Chen J, Midorikawa K.
  • Eur Biophys J. 2005 Feb;34(1):82-90. Epub 2004 Jun 30. Dual-channel photobleaching FRET microscopy for improved resolution of protein association states in living cells. Clayton AH, Klonis N, Cody SH, Nice EC. 
  • J Microsc. 2004 Jul;215(Pt 1):1-12. Multi-dimensional time-correlated single photon counting (TCSPC) fluorescence lifetime imaging microscopy (FLIM) to detect FRET in cells. Duncan RR, Bergmann A, Cousin MA, Apps DK, Shipston MJ.
  • Biol Proced Online. 2004;6:78-82. Epub 2004 May 12. Fluorescence Resonance Energy Transfer (FRET) as a method to calculate the dimerization strength of basic Helix-Loop-Helix (bHLH) proteins. Centonze VE, Firulli BA, Firulli AB.
  • Methods. 2004 Aug;33(4):281-6. Using GFP to image peptide hormone and neuropeptide release in vitro and in vivo. Levitan ES.
  • Biol Cell. 2004 Apr;96(3):231-6. Imaging molecular interactions by multiphoton FLIM. Peter M, Ameer-Beg SM.
  • Curr Pharm Biotechnol. 2004 Jun;5(3):299-308. Time-resolved confocal fluorescence imaging and spectrocopy system with single molecule sensitivity and sub-micrometer resolution. Wahl M, Koberling F, Patting M, Rahn H, Erdmann R.
  • Methods Mol Biol. 2004;284:259-70. Measuring dynamic changes in cAMP using fluorescence resonance energy transfer. Evellin S, Mongillo M, Terrin A, Lissandron V, Zaccolo M.
  • Curr Pharm Biotechnol. 2004 Apr;5(2):231-41. Parallel confocal detection of single biomolecules using diffractive optics and integrated detector units. Blom H, G¦Õsch M.\
  • Curr Opin Plant Biol. 2004 Jun;7(3):345-51. Minimally invasive dynamic imaging of ions and metabolites in living cells. Fehr M, Ehrhardt DW, Lalonde S, Frommer WB.
  • Annu Rev Phys Chem. 2004;55:585-611. Single-molecule optics. Kulzer F, Orrit M.
  • J Struct Biol. 2004 Jul;147(1):62-9. Red-edge anisotropy microscopy enables dynamic imaging of homo-FRET between green fluorescent proteins in cells. Squire A, Verveer PJ, Rocks O, Bastiaens PI.
  • Luminescence. 2004 Mar-Apr;19(2):85-93. Antisense activity detection by inhibition of fluorescence resonance energy transfer. Ben¦Ítez-Hess ML, DiPaolo JA, Alvarez-Salas LM.
  • Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6462-5. Epub 2004 Apr 19. Single-molecule high-resolution imaging with photobleaching. Gordon MP, Ha T, Selvin PR.
  • Circ Res. 2004 Apr 16;94(7):866-73. Use of chimeric fluorescent proteins and fluorescence resonance energy transfer to monitor cellular responses. Zaccolo M.
  • Am J Physiol Renal Physiol. 2004 Aug;287(2):F329-35. Epub 2004 Apr 13. Real-time imaging of renin release in vitro. Peti-Peterdi J, Fintha A, Fuson AL, Tousson A, Chow RH.    
  • Methods Mol Biol. 2004;261:351-70. Microscopic analysis of fluorescence resonance energy transfer (FRET). Herman B, Krishnan RV, Centonze VE.
  • Biophys J. 2004 Apr;86(4):2517-29. Correcting confocal acquisition to optimize imaging of fluorescence resonance energy transfer by sensitized emission. van Rheenen J, Langeslag M, Jalink K.
  • Nat Biotechnol. 2004 Apr;22(4):445-9. Epub 2004 Feb 29. An improved cyan fluorescent protein variant useful for FRET. Rizzo MA, Springer GH, Granada B, Piston DW.
  • Nat Biotechnol. 2004 Mar;22(3):289-96. The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins. Verkhusha VV, Lukyanov KA.
  • Front Biosci. 2004 May 1;9:1598-610. Applications of multi-photon microscopy in cell physiology.Methods Mol Biol. 2004;263:333-44. Fluorescence resonance energy transfer-based HIV-1 virion fusion assay. 
  • Methods Mol Biol. 2004;263:333-44. Fluorescence resonance energy transfer-based HIV-1 virion fusion assay. Cavrois M, Neidleman J, Bigos M, Greene WC.Cavrois M, Neidleman J, Bigos M, Greene WC. Niggli E, Egger M.
  • Biochemistry. 2004 Feb 17;43(6):1685-93. Cholesterol crystal nucleation from enzymatically modified low-density lipoproteins: combined effect of sphingomyelinase and cholesterol esterase. Guarino AJ, Tulenko TN, Wrenn SP.
  • Biophys J. 2004 Jan;86(1 Pt 1):506-16. Triple-color coincidence analysis: one step further in following higher order molecular complex formation. Heinze KG, Jahnz M, Schwille P.
  • J Microsc. 2004 Jan;213(Pt 1):46-62.- Optimizing imaging parameters for the separation of multiple labels in a fluorescence image. Neher R, Neher E.
  • J Microsc. 2004 Jan;213(Pt 1):1-5. Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data.
  • Microsc Res Tech. 2004 Jan 1;63(1):72-80. Characterization of two-photon excitation fluorescence lifetime imaging microscopy for protein localization. Chen Y, Periasamy A.
  • Methods Mol Biol. 2004;237:223-32. The use of green fluorescent proteins to view association between phospholipase C beta and G protein subunits in cells. Scarlata S, Dowal L.
  • Curr Protoc Cytom. 2005 Feb;Chapter 12:Unit 12.3. Modern confocal microscopy. Rajwa B.
  • Nucleic Acids Symp Ser (Oxf). 2005;(49):207-8. Development of real time imaging of specific messenger RNA in a living cell using artificial antisense nucleic acids. Okabe K, Ikeda H, Harada Y, Funatsu T.
  • J Phys Chem B. 2005 Aug 25;109(33):15691-8. Simultaneous time- and wavelength-resolved fluorescence microscopy of single molecules. Luong AK, Gradinaru CC, Chandler DW, Hayden CC.   
  • Methods Enzymol. 2005;403:119-34. Visualization of Rab5 activity in living cells using FRET microscopy.
  • J Fluoresc. 2005 Sep;15(5):707-21. Improved fluorescent proteins for single-molecule research in molecular tracking and co-localization. Steinmeyer R, Noskov A, Krasel C, Weber I, Dees C, Harms GS. Galperin E, Sorkin A.
  • Biochim Biophys Acta. 2005 Dec 30;1746(3):221-33. Epub 2005 Aug 25. Use of Forster's resonance energy transfer microscopy to study lipid rafts. Rao M, Mayor S.
  • Trends Biotechnol. 2005 Dec;23(12):605-13. Epub 2005 Nov 2. Fluorescent proteins as a toolkit for in vivo imaging. Chudakov DM, Lukyanov S, Lukyanov KA.
  • J Gen Physiol. 2005 Nov;126(5):429-38. Generation of functional fluorescent BK channels by random insertion of GFP variants. Giraldez T, Hughes TE, Sigworth FJ.
  • J Biol Chem. 2006 Jan 6;281(1):608-16. Epub 2005 Oct 24. Biosensors to measure inositol 1,4,5-trisphosphate concentration in living cells with spatiotemporal resolution. Remus TP, Zima AV, Bossuyt J, Bare DJ, Martin JL, Blatter LA, Bers DM, Mignery GA.
  • J Biomed Opt. 2005 May-Jun;10(3):034008. Application of microscopic Forster resonance energy transfer to cytological diagnosis of the thyroid tumors. Murata S, Herman P, Iwashina M, Mochizuki K, Nakazawa T, Kondo T, Nakamura N, Lakowicz JR, Katoh R.
  • Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15471-6. Epub 2005 Oct 12. Single-molecule Forster resonance energy transfer study of protein dynamics under denaturing conditions. Kuzmenkina EV, Heyes CD, Nienhaus GU.
  • Clin Hemorheol Microcirc. 2005;33(3):293-302. New tool to monitor membrane potential by FRET Voltage Sensitive Dye (FRET-VSD) using Spectral and Fluorescence Lifetime Imaging Microscopy (FLIM). Interest in cell engineering. Dumas D, Stoltz JF.
  • Microsc Res Tech. 2005 Sep;68(1):51-8. PixFRET, an ImageJ plug-in for FRET calculation that can accommodate variations in spectral bleed-throughs. Feige JN, Sage D, Wahli W, Desvergne B, Gelman L.
  • Chemistry. 2005 Dec 9;11(24):7294-304. Three distinct read-out modes for enzyme activity can operate in a semi-wet supramolecular hydrogel. Tamaru S, Kiyonaka S, Hamachi I.
  • Biophys J. 2005 Dec;89(6):3822-36. Epub 2005 Sep 30. A flexible approach to the calculation of resonance energy transfer efficiency between multiple donors and acceptors in complex geometries. Corry B, Jayatilaka D, Rigby P.
  • Biophys J. 2005 Dec;89(6):4286-99. Epub 2005 Sep 16. Fluorescence lifetime heterogeneity resolution in the frequency domain by lifetime moments analysis. Esposito A, Gerritsen HC, Wouters FS.
  • Cytometry A. 2005 Oct;67(2):119-28. Computer program for analyzing donor photobleaching FRET image series. Szentesi G, Vereb G, Horv¦Áth G, Bodn¦Ár A, F¦Ábi¦Án A, Matk¦Ò J, G¦Ásp¦Ár R, Damjanovich S, M¦Átyus L, Jenei A.
  • Cytometry A. 2005 Oct;67(2):112-8. Fluorescence lifetime imaging in an optically sectioning programmable array microscope (PAM). Hanley QS, Lidke KA, Heintzmann R, Arndt-Jovin DJ, Jovin TM.   
  • Biophys Chem. 2006 Jan 20;119(2):121-6. Epub 2005 Sep 12. Lipophilic porphyrin microparticles induced by AOT reverse micelles: a fluorescence lifetime imaging study. Togashi DM, Costa SM, Sobral AJ.
  • Biophys J. 2005 Nov;89(5):3508-22. Epub 2005 Aug 19. Pulsed interleaved excitation. Mόller BK, Zaychikov E, Br¦Äuchle C, Lamb DC.
  • J Am Chem Soc. 2005 Aug 24;127(33):11851-62. Phosphorescent oxygen sensor with dendritic protection and two-photon absorbing antenna. Bri¦Ñas RP, Troxler T, Hochstrasser RM, Vinogradov SA.
  • J Am Chem Soc. 2005 Aug 24;127(33):11835-41. Cooperation between artificial receptors and supramolecular hydrogels for sensing and discriminating phosphate derivatives. Yamaguchi S, Yoshimura I, Kohira T, Tamaru S, Hamachi I.
  • Biophys J. 2005 Nov;89(5):3470-9. Epub 2005 Aug 12. Single-molecule FRET studies of important intermediates in the nucleocapsid-protein-chaperoned minus-strand transfer step in HIV-1 reverse transcription. Liu HW, Cosa G, Landes CF, Zeng Y, Kovaleski BJ, Mullen DG, Barany G, Musier-Forsyth K, Barbara PF.
  • Biophys J. 2005 Oct;89(4):2736-49. Epub 2005 Jul 22. Quantitative multiphoton spectral imaging and its use for measuring resonance energy transfer. Thaler C, Koushik SV, Blank PS, Vogel SS.
  • Chembiochem. 2005 Aug;6(8):1323-30. Multiparameter imaging for the analysis of intracellular signaling. Schultz C, Schleifenbaum A, Goedhart J, Gadella TW Jr.
  • Annu Rev Biomed Eng. 2005;7:55-76. Quantum dots as cellular probes. Alivisatos AP, Gu W, Larabell C.
  • J Microsc. 2005 Jun;218(Pt 3):253-62. Fluorescence resonance energy transfer (FRET) measurement by gradual acceptor photobleaching. Van Munster EB, Kremers GJ, Adjobo-Hermans MJ, Gadella TW Jr.
  • Proc Natl Acad Sci U S A. 2005 Jun 14;102(24):8740-5. Epub 2005 Jun 6. Detection of glutamate release from neurons by genetically encoded surface-displayed FRET nanosensors. Okumoto S, Looger LL, Micheva KD, Reimer RJ, Smith SJ, Frommer WB.
  • Nat Mater. 2005 Jun;4(6):435-46. Quantum dot bioconjugates for imaging, labelling and sensing. Medintz IL, Uyeda HT, Goldman ER, Mattoussi H.
  • Biochim Biophys Acta. 2005 Jul 10;1744(3):259-72. Imaging the secretory pathway: the past and future impact of live cell optical techniques. Presley JF.
  • Chemphyschem. 2005 May;6(5):956-60. Single-molecule quantum-dot fluorescence resonance energy transfer. Hohng S, Ha T. 
  • Chemphyschem. 2005 May;6(5):838-49. Green and red fluorescent proteins: photo- and thermally induced dynamics probed by site-selective spectroscopy and hole burning. Bonsma S, Purchase R, Jezowski S, Gallus J, K¦Õnz F, V¦Õlker S. 
  • Trends Neurosci. 2005 May;28(5):217-9. A multi-photon window onto neuronal-glial-vascular communication. Hirase H.
  • Biochemistry. 2005 May 10;44(18):7085-94. Reversible photobleaching of enhanced green fluorescent proteins. Sinnecker D, Voigt P, Hellwig N, Schaefer M.
  • Biochem Biophys Res Commun. 2005 May 13;330(3):914-20. A new pair for inter- and intra-molecular FRET measurement. Yang X, Xu P, Xu T.
  • Mol Endocrinol. 2005 Jul;19(7):1675-86. Epub 2005 Mar 10. Imaging molecular interactions in living cells. Day RN, Schaufele F.
  • J Pharmacol Sci. 2005 Mar;97(3):361-8. Epub 2005 Mar 5. Simultaneous real-time detection of initiator- and effector-caspase activation by double fluorescence resonance energy transfer analysis. Kawai H, Suzuki T, Kobayashi T, Sakurai H, Ohata H, Honda K, Momose K, Namekata I, Tanaka H, Shigenobu K, Nakamura R, Hayakawa T, Kawanishi T.
  • Cytometry A. 2005 Apr;64(2):87-100. 7-Ketocholesterol favors lipid accumulation and colocalizes with Nile Red positive cytoplasmic structures formed during 7-ketocholesterol-induced apoptosis: analysis by flow cytometry, FRET biphoton spectral imaging microscopy, and subcellular fractionation. Vejux A, Kahn E, Dumas D, Bess¦Ède G, M¦Én¦Étrier F, Athias A, Riedinger JM, Frouin F, Stoltz JF, Ogier-Denis E, Todd-Pokropek A, Lizard G.
  • Biophys J. 2005 May;88(5):3625-34. Epub 2005 Feb 18. Identification of plasma membrane macro- and microdomains from wavelet analysis of FRET microscopy. Kobrinsky E, Mager DE, Bentil SA, Murata S, Abernethy DR, Soldatov NM.
  • Curr Opin Biotechnol. 2005 Feb;16(1):19-27. Imaging protein molecules using FRET and FLIM microscopy. Wallrabe H, Periasamy A.
  • Curr Opin Biotechnol. 2005 Feb;16(1):13-8. Total internal reflection fluorescence microscopy: technical innovations and novel applications. Schneckenburger H.
  • Mol Cell Biol. 2005 Mar;25(5):1680-95. Spatially distinct binding of Cdc42 to PAK1 and N-WASP in breast carcinoma cells. Parsons M, Monypenny J, Ameer-Beg SM, Millard TH, Machesky LM, Peter M, Keppler MD, Schiavo G, Watson R, Chernoff J, Zicha D, Vojnovic B, Ng T.
  • Cytometry A. 2005 Mar;64(1):3-9. Genetically encoded sensors for metabolites. Deuschle K, Fehr M, Hilpert M, Lager I, Lalonde S, Looger LL, Okumoto S, Persson J, Schmidt A, Frommer WB.
  • Biophys J. 2005 Apr;88(4):2939-53. Epub 2005 Jan 14. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Lee NK, Kapanidis AN, Wang Y, Michalet X, Mukhopadhyay J, Ebright RH, Weiss S.
  • Chembiochem. 2005 Jan;6(1):78-85. Imaging activation of two Ras isoforms simultaneously in a single cell. Peyker A, Rocks O, Bastiaens PI.  
  • Curr Protoc Cytom. 2006 Nov;Chapter 12:Unit12.8. Measuring FRET in flow cytometry and microscopy. Nagy P, Vereb G, Damjanovich S, M¦Átyus L, Sz¦Õll¦Ôsi J.
  • Curr Protoc Cytom. 2006 Feb;Chapter 12:Unit12.7. Detecting protein-protein interactions with CFP-YFP FRET by acceptor photobleaching. Karpova T, McNally JG.
  • Curr Protoc Cytom. 2006 Nov;Chapter 1:Unit1.12. Principles of resonance energy transfer. Sz¦Õllosi J, Damjanovich S, Nagy P, Vereb G, M¦Átyus L.
  • Curr Protoc Neurosci. 2006 Feb;Chapter 5:Unit 5.23. Monitoring protein-protein interactions in living cells by bioluminescence resonance energy transfer (BRET). Hamdan FF, Percherancier Y, Breton B, Bouvier M.
  • Curr Protoc Neurosci. 2006 Feb;Chapter 5:Unit 5.22. Imaging protein-protein interactions by Fluorescence Resonance Energy Transfer (FRET) microscopy. Wouters FS, Bastiaens PI.
  • Microsc Microanal. 2006 Jun;12(3):238-54. Optimization of pairings and detection conditions for measurement of FRET between cyan and yellow fluorescent proteins.  
  • Appl Spectrosc. 2006 Dec;60(12):1442-52. Spectrally resolved frequency domain analysis of multi-fluorophore systems undergoing energy transfer. Forde TS, Hanley QS.
  • Biotechniques. 2006 Dec;41(6):688, 690, 692. Live-cell assay for simultaneous monitoring of expression and interaction of proteins. Wolff H, Hartl A, Eilken HM, Hadian K, Ziegler M, Brack-Werner R.
  • J Phys Chem B. 2006 Dec 28;110(51):26068-74. Quenching of photoluminescence in conjugates of quantum dots and single-walled carbon nanotube. Biju V, Itoh T, Baba Y, Ishikawa M.
  • Biophys J. 2007 Mar 15;92(6):2237-54. Epub 2006 Dec 15. Photophysics of Clomeleon by FLIM: discriminating excited state reactions along neuronal development. Jose M, Nair DK, Reissner C, Hartig R, Zuschratter W.
  • Opt Express. 2006 Dec 11;14(25):12217-29. FRET-FLIM at nanometer spectral resolution from living cells. Nair DK, Jose M, Kuner T, Zuschratter W, Hartig R.
  • Nat Rev Mol Cell Biol. 2006 Dec;7(12):944-52. Combinatorial microscopy. Axelrod D, Omann GM.
  • Methods Enzymol. 2006;414:633-42. Fluorescence lifetime imaging microscopy: two-dimensional distribution measurement of fluorescence lifetime. Fujiwara M, Cieslik W.
  • Methods. 2006 Dec;40(4):353-9. Analysis of in vivo targets of transcriptional activators by fluorescence resonance energy transfer. Bhaumik SR.
  • Phys Chem Chem Phys. 2006 Nov 21;8(43):5079-85. Epub 2006 Aug 1. Water soluble quantum dot nanoclusters: energy migration in artifical materials. Oh MH, Gentleman DJ, Scholes GD.
  • Microsc Res Tech. 2006 Dec;69(12):941-56. FRET and colocalization analyzer--a method to validate measurements of sensitized emission FRET acquired by confocal microscopy and available as an ImageJ Plug-in. Hachet-Haas M, Converset N, Marchal O, Matthes H, Gioria S, Galzi JL, Lecat S.
  • Biochem Soc Trans. 2006 Nov;34(Pt 5):679-82. Fluorescence lifetime imaging microscopy (FLIM) to quantify protein-protein interactions inside cells. Duncan RR.
  • Eur J Pharm Biopharm. 2007 Mar;65(3):270-81. Epub 2006 Sep 1. Fate of micelles and quantum dots in cells. Maysinger D, Lovrić J, Eisenberg A, Savić R.
  • Biophys J. 2006 Dec 1;91(11):4273-84. Epub 2006 Sep 15. Dual-color photon counting histogram analysis of mRFP1 and EGFP in living cells. Hillesheim LN, Chen Y, Mόller JD.
  • J Biol Chem. 2006 Nov 24;281(47):36338-46. Epub 2006 Sep 15. Fluorometric measurements of intermolecular distances between the alpha- and beta-subunits of the Na+/K+-ATPase. Dempski RE, Hartung K, Friedrich T, Bamberg E.
  • Opt Express. 2006 Sep 18;14(19):8716-21. Distance and orientation measurement in the nanometric scale based on polarization anisotropy of metallic dimers. Grecco HE, Mart¦Ínez OE.
  • Cytometry A. 2006 Aug 1;69(8):940-6. Increasing lanthanide luminescence by use of the RETEL effect. Leif RC, Vallarino LM, Becker MC, Yang S.
  • Methods Mol Biol. 2006;346:281-96. Using quantitative fluorescence microscopy and FRET imaging to measure spatiotemporal signaling events in single living cells. Xu X, Brzostowski JA, Jin T.
  • Methods Mol Biol. 2006;346:229-46. Application of fluorescent protein tags as reporters in live-cell imaging studies. Mόller-Taubenberger A.
  • Curr Opin Chem Biol. 2006 Oct;10(5):409-16. Epub 2006 Sep 1. Imaging molecular interactions in living cells by FRET microscopy. Jares-Erijman EA, Jovin TM.
  • Microsc Res Tech. 2006 Nov;69(11):933-9. Sensitivity of CFP/YFP and GFP/mCherry pairs to donor photobleaching on FRET determination by fluorescence lifetime imaging microscopy in living cells. Tramier M, Zahid M, Mevel JC, Masse MJ, Coppey-Moisan M.
  • Methods Mol Biol. 2006;337:65-77. Spectroscopy-based quantitative fluorescence resonance energy transfer analysis. Zheng J.
  • Cytometry A. 2006 Aug 1;69(8):904-11. Quantitative linear unmixing of CFP and YFP from spectral images acquired with two-photon excitation. Thaler C, Vogel SS.
  • J Biomed Opt. 2006 May-Jun;11(3):34017. Comparing the quantification of Forster resonance energy transfer measurement accuracies based on intensity, spectral, and lifetime imaging. Pelet S, Previte MJ, So PT.
  • J Biomed Opt. 2006 May-Jun;11(3):34015. Fluorescence resonance energy transfer imaging via fluorescence polarization measurement. Cohen-Kashi M, Namer Y, Deutsch M.
  • J Biol Chem. 2006 Sep 8;281(36):26400-7. Epub 2006 Jun 30. Interaction between presenilin 1 and ubiquilin 1 as detected by fluorescence lifetime imaging microscopy and a high-throughput fluorescent plate reader. Thomas AV, Herl L, Spoelgen R, Hiltunen M, Jones PB, Tanzi RE, Hyman BT, Berezovska O.
  • Biophys J. 2006 Sep 1;91(5):L42-4. Epub 2006 Jun 23. Urea-induced unfolding of the immunity protein Im9 monitored by spFRET. Tezuka-Kawakami T, Gell C, Brockwell DJ, Radford SE, Smith DA.
  • Opt Lett. 2006 Jul 15;31(14):2157-9. Multidimensional single-molecule imaging in live cells using total-internal-reflection fluorescence microscopy. Webb SE, Needham SR, Roberts SK, Martin-Fernandez ML.
  • Nat Methods. 2006 Jul;3(7):519-24. Monitoring dynamic protein interactions with photoquenching FRET. Demarco IA, Periasamy A, Booker CF, Day RN.
  • Lab Invest. 2006 Aug;86(8):853-64. Epub 2006 Jun 19. FRET-CLSM and double-labeling indirect immunofluorescence to detect close association of proteins in tissue sections. K¦Õnig P, Krasteva G, Tag C, K¦Õnig IR, Arens C, Kummer W.
  • IEEE Trans Biomed Eng. 2006 Jun;53(6):1141-52. Influence of fluorescence anisotropy on fluorescence intensity and lifetime measurement: theory, simulations and experiments. Fixler D, Namer Y, Yishay Y, Deutsch M.
  • Methods Enzymol. 2006;407:128-43. Analysis of Ras activation in living cells with GFP-RBD. Bivona TG, Quatela S, Philips MR.
  • Cytometry A. 2006 Jul;69(7):563-72. Functional proteometrics for cell migration. Shen F, Hodgson L, Rabinovich A, Pertz O, Hahn K, Price JH.
  • Biochim Biophys Acta. 2006 May-Jun;1763(5-6):561-75. Epub 2006 Apr 20.High resolution imaging of live mitochondria. Jakobs S.
  •   Chemphyschem. 2006 Jul 17;7(7):1442-54. Monitoring protein interactions in the living cell through the fluorescence decays of the cyan fluorescent protein. Grailhe R, Merola F, Ridard J, Couvignou S, Le Poupon C, Changeux JP, Laguitton-Pasquier H.
  •   Acta Physiol (Oxf). 2006 May-Jun;187(1-2):141-7. Development of an spFRET method to measure structure changes in ion exchange proteins. Lesoine JF, Holmberg B, Maloney P, Wang X, Novotny L, Knauf PA.
  •   J Microsc. 2006 Apr;222(Pt 1):15-21. A fusion tag enabling optical marking and tracking of proteins and cells by FRET-acceptor photobleaching. Kuppig S, Nitschke R.
  •   Biochemistry. 2006 May 30;45(21):6570-80. Cyan and yellow super fluorescent proteins with improved brightness, protein folding, and FRET F¦Õrster radius. Kremers GJ, Goedhart J, van Munster EB, Gadella TW Jr.  
  •   Biophys J. 2006 Aug 1;91(3):1032-45. Epub 2006 May 12. Determination of the orientational distribution and orientation factor for transfer between membrane-bound fluorophores using a confocal microscope. Corry B, Jayatilaka D, Martinac B, Rigby P.
  •   Cytometry A. 2006 Aug 1;69(8):759-66. Microspectroscopic fluorescence analysis with prism-based imaging spectrometers: review and current studies. Hanley QS, Murray PI, Forde TS.
  •   Sci STKE. 2006 Apr 18;2006(331):re2. Fanciful FRET. Vogel SS, Thaler C, Koushik SV.
  •   Science. 2006 Apr 14;312(5771):217-24. The fluorescent toolbox for assessing protein location and function. Giepmans BN, Adams SR, Ellisman MH, Tsien RY.
  • Anal Bioanal Chem. 2006 Jun;385(3):500-17. Epub 2006 Apr 12. Optical technologies for the read out and quality control of DNA and protein microarrays. Sch¦Äferling M, Nagl S.
  • Appl Opt. 2006 Mar 20;45(9):2115-23. Technique for measurement of fluorescence lifetime by use of stroboscopic excitation and continuous-wave detection. Matthews DR, Summers HD, Njoh K, Errington RJ, Smith PJ, Barber P, Ameer-Beg S, Vojnovic B.
  • Microsc Res Tech. 2006 Mar;69(3):175-85. Improving autofluorescent proteins: comparative studies of the effective brightness of Green Fluorescent Protein (GFP) mutants. Jung G, Zumbusch A.
  • Microsc Res Tech. 2006 Mar;69(3):196-206. Issues in confocal microscopy for quantitative FRET analysis. Wallrabe H, Chen Y, Periasamy A, Barroso M.
  • Microsc Res Tech. 2006 Mar;69(3):186-95. Fluorescence lifetime images and correlation spectra obtained by multidimensional time-correlated single photon counting. Becker W, Bergmann A, Haustein E, Petrasek Z, Schwille P, Biskup C, Kelbauskas L, Benndorf K, Kl¦Õcker N, Anhut T, Riemann
  • Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4089-94. Epub 2006 Mar 6. A dark yellow fluorescent protein (YFP)-based Resonance Energy-Accepting Chromoprotein (REACh) for F¦Õrster resonance energy transfer with GFP. Ganesan S, Ameer-Beg SM, Ng TT, Vojnovic B, Wouters FS.
  • Nat Biotechnol. 2006 Mar;24(3):339-43. Epub 2006 Feb 26. Self-illuminating quantum dot conjugates for in vivo imaging. So MK, Xu C, Loening AM, Gambhir SS, Rao J.
  • Cytometry A. 2006 Apr;69(4):291-8. Isolation of FRET-positive cells using single 408-nm laser flow cytometry. van Wageningen S, Pennings AH, van der Reijden BA, Boezeman JB, de Lange F, Jansen JH.
  • Cytometry A. 2006 Apr;69(4):299-306. Setup and characterization of a multiphoton FLIM instrument for protein-protein interaction measurements in living cells.
  • J Biol Chem. 2006 Apr 21;281(16):11074-81. Epub 2006 Feb 21. Real-time enzyme dynamics illustrated with fluorescence spectroscopy of p-hydroxybenzoate hydroxylase. Westphal AH, Matorin A, Hink MA, Borst JW, van Berkel WJ, Visser AJ.
  • Biochemistry. 2006 Feb 28;45(8):2618-28. Molecular dissection of the interaction between amyloid precursor protein and its neuronal trafficking receptor SorLA/LR11. Andersen OM, Schmidt V, Spoelgen R, Gliemann J, Behlke J, Galatis D, McKinstry WJ, Parker MW, Masters CL, Hyman BT, Cappai R, Willnow TE.
  • Biochemistry. 2006 Feb 28;45(8):2504-14. EF-G-dependent GTPase on the ribosome. conformational change and fusidic acid inhibition. Seo HS, Abedin S, Kamp D, Wilson DN, Nierhaus KH, Cooperman BS.
  • Biochemistry. 2006 Feb 14;45(6):1755-64. Delivery of phosphodiester oligonucleotides: can DOTAP/DOPE liposomes do the trick? Remaut K, Lucas B, Braeckmans K, Sanders NN, Demeester J, De Smedt SC.
  • Ann Biomed Eng. 2006 Jan;34(1):3-14. Epub 2006 Feb 1. Engineering luminescent quantum dots for in vivo molecular and cellular imaging. Smith AM, Ruan G, Rhyner MN, Nie S.
  • Nat Methods. 2006 Feb;3(2):83-9. Fluorescence cross-correlation spectroscopy in living cells. Bacia K, Kim SA, Schwille P.
  • Nat Neurosci. 2006 Feb;9(2):283-91. Epub 2006 Jan 22. Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Yasuda R, Harvey CD, Zhong H, Sobczyk A, van Aelst L, Svoboda K.
  • J Fluoresc. 2006 Jan;16(1):95-104. Epub 2006 Jan 6. Intensity range based quantitative FRET data analysis to localize protein molecules in live cell nuclei. Chen Y, Periasamy A.
  • Curr Protoc Cytom. 2007 Oct;Chapter 12:Unit12.10. Detecting protein-protein interactions in vivo with FRET using multiphoton fluorescence lifetime imaging microscopy (FLIM). Ll¦Ères D, Swift S, Lamond AI.
  • Methods Mol Biol. 2007;411:47-80. Fluorescent proteins for cell biology. Patterson GH.
  • Methods Mol Biol. 2007;398:231-44. Small-angle neutron scattering to detect rafts and lipid domains. Pencer J, Mills TT, Kucerka N, Nieh MP, Katsaras J.
  • Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):365-70. Epub 2007 Dec 28. Differential patterning of cGMP in vascular smooth muscle cells revealed by single GFP-linked biosensors. Nausch LW, Ledoux J, Bonev AD, Nelson MT, Dostmann WR.
  • J Biomed Opt. 2007 Nov-Dec;12(6):064015. Mechanistic study of apoptosis induced by high-fluence low-power laser irradiation using fluorescence imaging techniques.
  • Opt Express. 2007 Dec 24;15(26):18220-35. Picosecond-resolution fluorescence lifetime imaging microscopy: a useful tool for sensing molecular interactions in vivo via FRET. Zhong W, Wu M, Chang CW, Merrick KA, Merajver SD, Mycek MA.
  • Biophys J. 2008 Apr 1;94(7):2859-68. Epub 2007 Dec 7. Conformation of the c-Fos/c-Jun complex in vivo: a combined FRET, FCCS, and MD-modeling study. V¦Ámosi G, Baudendistel N, von der Lieth CW, Szal¦Òki N, Mocs¦Ár G, Mόller G, Br¦Ázda P, Waldeck W, Damjanovich S, Langowski J, T¦Òth K.    
  • J Cell Sci. 2007 Dec 15;120(Pt 24):4247-60. Advances in fluorescent protein technology. Shaner NC, Patterson GH, Davidson MW.
  • J Biomed Opt. 2007 Sep-Oct;12(5):054012. Bioluminescence measurements in mice using a skin window. Huang Q, Acha V, Yow R, Schneider E, Sardar DK, Hornsby PJ.
  • J Biomed Opt. 2007 Sep-Oct;12(5):054011. Estimating protein-protein interaction affinity in living cells using quantitative F¦Õrster resonance energy transfer measurements. Chen H, Puhl HL 3rd, Ikeda SR.
  • Biophys J. 2008 Jan 15;94(2):L14-6. Epub 2007 Nov 2. The phasor approach to fluorescence lifetime imaging analysis. Digman MA, Caiolfa VR, Zamai M, Gratton E.
  • J Microsc. 2007 Nov;228(Pt 2):139-52. Characterization of spectral FRET imaging microscopy for monitoring nuclear protein interactions. Chen Y, Mauldin JP, Day RN, Periasamy A.
  • J Microsc. 2007 Nov;228(Pt 2):123-31. Noise-induced systematic errors in ratio imaging: serious artefacts and correction with multi-resolution denoising. Wang YL.
  • Methods Mol Biol. 2007;400:489-501. Fluorescence resonance energy transfer to characterize cholesterol-induced domains. Loura LM, Prieto M.
  • Methods Mol Biol. 2007;392:183-97. The use of FRET in the analysis of motor protein structure. Kasprzak AA.
  • PLoS One. 2007 Oct 10;2(10):e1011. Sensitive detection of p65 homodimers using red-shifted and fluorescent protein-based FRET couples. Goedhart J, Vermeer JE, Adjobo-Hermans MJ, van Weeren L, Gadella TW Jr.
  • Biophys J. 2008 Feb 1;94(3):1001-9. Epub 2007 Oct 5. Subcellular imaging of dynamic protein interactions by bioluminescence resonance energy transfer. Coulon V, Audet M, Homburger V, Bockaert J, Fagni L, Bouvier M, Perroy J.
  • Nucleic Acids Res. 2007;35(18):e124. Epub 2007 Sep 22. Surveillance of siRNA integrity by FRET imaging. J¦Ärve A, Mόller J, Kim IH, Rohr K, MacLean C, Fricker G, Massing U, Eberle F, Dalpke A, Fischer R, Trendelenburg MF, Helm M.
  • Semin Cell Dev Biol. 2007 Oct;18(5):591-8. Epub 2007 Jul 25. Optical techniques for imaging membrane lipid microdomains in living cells. Owen DM, Neil MA, French PM, Magee AI.
  • Nat Methods. 2007 Sep;4(9):741-6. Epub 2007 Aug 26. Bright far-red fluorescent protein for whole-body imaging. Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM.
  • Appl Microbiol Biotechnol. 2007 Nov;77(1):1-12. Epub 2007 Aug 18. Recent advances using green and red fluorescent protein variants. Mόller-Taubenberger A, Anderson KI.    
  • Biochemistry. 2007 Sep 4;46(35):9865-73. Epub 2007 Aug 8. X-ray structure of Cerulean GFP: a tryptophan-based chromophore useful for fluorescence lifetime imaging. Malo GD, Pouwels LJ, Wang M, Weichsel A, Montfort WR, Rizzo MA, Piston DW, Wachter RM.
  • J Nanosci Nanotechnol. 2007 Aug;7(8):2567-81. Semiconductor quantum dots for in vivo imaging. Li ZB, Cai W, Chen X.
  • J Fluoresc. 2007 Nov;17(6):775-83. Epub 2007 Jul 20. Fluorescence from diffusing single molecules illuminates biomolecular structure and dynamics. Mukhopadhyay S, Deniz AA.
  • Mol Vis. 2007 Jun 14;13:854-61. Confocal fluorescence resonance energy transfer microscopy study of protein-protein interactions of lens crystallins in living cells. Liu BF, Anbarasu K, Liang JJ.
  • J Fluoresc. 2007 Nov;17(6):785-95. Epub 2007 Jul 4. Single-pair FRET microscopy reveals mononucleosome dynamics. Koopmans WJ, Brehm A, Logie C, Schmidt T, van Noort J.
  • Methods Enzymol. 2007;423:267-98. Liposome-mediated assembly of receptor signaling complexes. Montefusco DJ, Asinas AE, Weis RM.
  • J Phys Chem A. 2007 Aug 2;111(30):6977-90. Epub 2007 Jul 4. Energy and electron transfer in enhanced two-photon-absorbing systems with triplet cores. Finikova OS, Troxler T, Senes A, DeGrado WF, Hochstrasser RM, Vinogradov SA.
  • Protein Sci. 2007 Jul;16(7):1429-38. An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins. Ohashi T, Galiacy SD, Briscoe G, Erickson HP.
  • Biophys J. 2007 Oct 15;93(8):2900-10. Epub 2007 Jun 22. Analysis of functional signaling domains from fluorescence imaging and the two-dimensional continuous wavelet transform. Mager DE, Kobrinsky E, Masoudieh A, Maltsev A, Abernethy DR, Soldatov NM.
  • Biochim Biophys Acta. 2007 Oct;1768(10):2345-54. Epub 2007 May 3. Heterodimerization of y(+)LAT-1 and 4F2hc visualized by acceptor photobleaching FRET microscopy. Kleemola M, Toivonen M, Mykk¦Änen J, Simell O, Huoponen K, Heiskanen KM.
  • Proc Natl Acad Sci U S A. 2007 Jun 12;104(24):10264-9. Epub 2007 Jun 5. Imaging protein interactions with bioluminescence resonance energy transfer (BRET) in plant and mammalian cells and tissues. Xu X, Soutto M, Xie Q, Servick S, Subramanian C, von Arnim AG, Johnson CH.
  • Mol Biosyst. 2007 Jun;3(6):381-91. Epub 2007 Mar 26. Imaging proteins in vivo using fluorescence lifetime microscopy. Festy F, Ameer-Beg SM, Ng T, Suhling K.
  • Methods Cell Biol. 2007;81:479-94. Theoretical principles and practical considerations for fluorescence resonance energy transfer microscopy. Cardullo RA.
  • Methods Cell Biol. 2007;81:63-91. Fundamentals of fluorescence and fluorescence microscopy. Wolf DE.
  • Biophys J. 2007 Sep 15;93(6):2178-87. Epub 2007 May 18. Kinetics of complexin binding to the SNARE complex: correcting single molecule FRET measurements for hidden events. Li Y, Augustine GJ, Weninger K.
  • Mol Cell Proteomics. 2007 Aug;6(8):1446-54. Epub 2007 May 16. Unsupervised fluorescence lifetime imaging microscopy for high content and high throughput screening. Esposito A, Dohm CP, B¦Ähr M, Wouters FS.
  • Biochim Biophys Acta. 2007 Aug;1768(8):1862-85. Epub 2007 Mar 28. Fluorescence as a method to reveal structures and membrane-interactions of amyloidogenic proteins. Munishkina LA, Fink AL.
  • Chembiochem. 2007 Jul 9;8(10):1099-101. Chemical labeling of protein in living cells. Dragulescu-Andrasi A, Rao J.
  • J Biomed Opt. 2007 Mar-Apr;12(2):024016. Application of fluorescence resonance energy transfer resolved by fluorescence lifetime imaging microscopy for the detection of enterovirus 71 infection in cells. Ghukasyan V, Hsu YY, Kung SH, Kao FJ.
  • J Fluoresc. 2007 Nov;17(6):759-65. Epub 2007 Apr 20. Detection and analysis of protein aggregation with confocal single molecule fluorescence spectroscopy. Hillger F, Nettels D, Dorsch S, Schuler B.
  • J Am Chem Soc. 2007 May 2;129(17):5597-604. Epub 2007 Apr 11. Design and synthesis of a library of BODIPY-based environmental polarity sensors utilizing photoinduced electron-transfer-controlled fluorescence ON/OFF switching. Sunahara H, Urano Y, Kojima H, Nagano T.
  • Biophys J. 2007 May 1;92(9):3098-104. Enumeration of oligomerization states of membrane proteins in living cells by homo-FRET spectroscopy and microscopy: theory and application. Yeow EK, Clayton AH.
  • Microsc Res Tech. 2007 May;70(5):442-51. Multi-dimensional fluorescence lifetime and FRET measurements. Biskup C, Zimmer T, Kelbauskas L, Hoffmann B, Kl¦Õcker N, Becker W, Bergmann A, Benndorf K.
  • Microsc Res Tech. 2007 Aug;70(8):687-709. Fluorescence microscopy: established and emerging methods, experimental strategies, and applications in immunology. Petty HR.
  • Nat Methods. 2007 Apr;4(4):345-51. Epub 2007 Mar 11. Fluorescence imaging of amyloid formation in living cells by a functional, tetracysteine-tagged alpha-synuclein.Res Microbiol. 2007 Apr;158(3):187-94. Epub 2007 Jan 18. Applications of fluorescence microscopy to single bacterial cells. Meyer P, Dworkin J. Roberti MJ, Bertoncini CW, Klement R, Jares-Erijman EA, Jovin TM.
  • Res Microbiol. 2007 Apr;158(3):187-94. Epub 2007 Jan 18. Applications of fluorescence microscopy to single bacterial cells. Meyer P, Dworkin J.
  • Biophys Chem. 2007 May;127(3):155-64. Epub 2007 Feb 1. High-precision FLIM-FRET in fixed and living cells reveals heterogeneity in a simple CFP-YFP fusion protein. Millington M, Grindlay GJ, Altenbach K, Neely RK, Kolch W, Bencina M, Read ND, Jones AC, Dryden DT, Magennis SW.
  • Thromb Haemost. 2007 Mar;97(3):378-84. Fluorescent proteins and fluorescence resonance energy transfer (FRET) as tools in signaling research. Schmid JA, Birbach A.
  • Annu Rev Biophys Biomol Struct. 2007;36:171-90. High-resolution, single-molecule measurements of biomolecular motion. Greenleaf WJ, Woodside MT, Block SM.
  • Curr Pharm Des. 2007;13(3):253-61. Activity based probes for proteases: applications to biomarker discovery, molecular imaging and drug screening. Fonović M, Bogyo M.
  • Methods. 2007 Mar;41(3):342-52. Homebuilt single-molecule scanning confocal fluorescence microscope studies of single DNA/protein interactions. Zheng H, Goldner LS, Leuba SH.
  • Microsc Res Tech. 2007 Mar;70(3):243-51. Fluorescence lifetime imaging of coral fluorescent proteins. Cox G, Matz M, Salih A.
  • Biophys J. 2007 May 1;92(9):3241-50. Epub 2007 Feb 2. Dynamics of synaptic SfiI-DNA complex: single-molecule fluorescence analysis. Karymov MA, Krasnoslobodtsev AV, Lyubchenko YL.
  • Biosens Bioelectron. 2007 Apr 15;22(9-10):2308-14. Epub 2007 Jan 5. Enzymatic nanolithography of FRET peptide layer using V8 protease-immobilized AFM probe. Nakamura C, Miyamoto C, Obataya I, Takeda S, Yabuta M, Miyake J.
  • Microsc Res Tech. 2007 Apr;70(4):382-9. High speed method for in situ multispectral image registration. Perrine KA, Lamarche BL, Hopkins DF, Budge SE, Opresko LK, Wiley HS, Sowa MB.
  • Indian J Exp Biol. 2007 Jan;45(1):48-57. Localization of protein-protein interactions in live cells using confocal and spectral imaging FRET microscopy. Chen Y, Periasamy A.
  • Biophys J. 2007 Apr 1;92(7):2422-33. Epub 2007 Jan 11. Investigation of domain formation in sphingomyelin/cholesterol/POPC mixtures by fluorescence resonance energy transfer and Monte Carlo simulations. Frazier ML, Wright JR, Pokorny A, Almeida PF.
  • J Phys Chem B. 2007 Jan 18;111(2):321-6. Multicolor single-molecule spectroscopy with alternating laser excitation for the investigation of interactions and dynamics.
  • Methods Mol Biol. 2007;365:133-54. Visualization of intracellular PP1 targeting through transiently and stably expressed fluorescent protein fusions. Trinkle-Mulcahy L, Chusainow J, Lam YW, Swift S, Lamond A.
  • Microsc Res Tech. 2007 Feb;70(2):85-94. Correlated fluorescence lifetime and spectral measurements in living cells. Spriet C, Trinel D, Waharte F, Deslee D, Vandenbunder B, Barbillat J, H¦Éliot L.
  • J Biophotonics. 2008 Dec;1(6):514-21. High speed unsupervised fluorescence lifetime imaging confocal multiwell plate reader for high content analysis. Talbot CB, McGinty J, Grant DM, McGhee EJ, Owen DM, Zhang W, Bunney TD, Munro I, Isherwood B, Eagle R, Hargreaves A, Dunsby C, Neil MA, French PM.
  • J Biophotonics. 2008 Dec;1(6):494-505. A compact, multidimensional spectrofluorometer exploiting supercontinuum generation. Manning HB, Kennedy GT, Owen DM, Grant DM, Magee AI, Neil MA, Itoh Y, Dunsby C, French PM.
  • J Biophotonics. 2008 Mar;1(1):74-82. Fluorescent proteins for single-molecule fluorescence applications. Seefeldt B, Kasper R, Seidel T, Tinnefeld P, Dietz KJ, Heilemann M, Sauer M.    
  • ACS Nano. 2008 Jan;2(1):120-4. A four-color colloidal multiplexing nanoparticle system. Ehlert O, Thomann R, Darbandi M, Nann T.
  • Rev Sci Instrum. 2008 Dec;79(12):123113. Scalable time-correlated photon counting system with multiple independent input channels. Wahl M, Rahn HJ, R¦Õhlicke T, Kell G, Nettels D, Hillger F, Schuler B, Erdmann R.
  • Methods Cell Biol. 2008;89:569-98. Chapter 22: Quantitation of protein-protein interactions: confocal FRET microscopy. Periasamy A, Wallrabe H, Chen Y, Barroso M.
  • Methods Cell Biol. 2008;89:541-68. Chapter 21: Quantitative fluorescence lifetime imaging in cells as a tool to design computational models of ran-regulated reaction networks. Kalab P, Pralle A.
  • Methods Cell Biol. 2008;89:169-221. Chapter 7: Total internal reflection fluorescence microscopy. Axelrod D.
  • Methods Cell Biol. 2008;89:37-57. Chapter 2: Molecular sensors based on fluorescence resonance energy transfer to visualize cellular dynamics. Ananthanarayanan B, Ni Q, Zhang J.
  • Adv Exp Med Biol. 2008;640:183-97. Visualization of protein interactions in living cells. Zal T.
  • Opt Express. 2008 Dec 8;16(25):20258-65. Simultaneous widefield single molecule orientation and FRET microscopy in cells. Webb SE, Rolfe DJ, Needham SR, Roberts SK, Clarke DT, McLachlan CI, Hobson MP, Martin-Fernandez ML.
  • Chem Commun (Camb). 2008 Dec 28;(48):6522-4. Epub 2008 Nov 7. Light harvesting antenna on an amyloid scaffold. Liang Y, Guo P, Pingali SV, Pabit S, Thiyagarajan P, Berland KM, Lynn DG.
  • Chem Commun (Camb). 2008 Dec 7;(45):5990-2. Epub 2008 Oct 14. A high sensitive and specific QDs FRET bioprobe for MNase. Huang S, Xiao Q, He ZK, Liu Y, Tinnefeld P, Su XR, Peng XN.
  • J Microsc. 2008 Nov;232(2):306-12. The polarized AB plot for the frequency-domain analysis and representation of fluorophore rotation and resonance energy homotransfer. Clayton AH.
  • Eur Biophys J. 2009 Apr;38(4):395-405. Epub 2008 Nov 18. Probing complexes with single fluorophores: factors contributing to dispersion of FRET in DNA/RNA duplexes. Cherny DI, Eperon IC, Bagshaw CR.
  • PLoS Comput Biol. 2008 Nov;4(11):e1000223. Epub 2008 Nov 14. Quantification of local morphodynamics and local GTPase activity by edge evolution tracking. Tsukada Y, Aoki K, Nakamura T, Sakumura Y, Matsuda M, Ishii S.
  • Biochemistry. 2008 Dec 9;47(49):13115-26. pHlameleons: a family of FRET-based protein sensors for quantitative pH imaging. Esposito A, Gralle M, Dani MA, Lange D, Wouters FS.
  • Eur Biophys J. 2009 Apr;38(4):355-67. Epub 2008 Nov 13. Surfactant-induced conformational transition of amyloid beta-peptide. Sureshbabu N, Kirubagaran R, Jayakumar R.  
  • Methods Mol Biol. 2008;491:199-212. The use of FRET microscopy to elucidate steady state channel conformational rearrangements and G protein interaction with the GIRK channels. Raveh A, Riven I, Reuveny E.
  • Methods Mol Biol. 2008;463:123-35. Time-lapse Microscopy and Fluorescence Resonance Energy Transfer to Analyze the Dynamics and Interactions of Nucleolar Proteins in Living Cells. Louvet E, Tramier M, Angelier N, Hernandez-Verdun D.
  • Brain Cell Biol. 2008 Aug;36(1-4):1-2. Optogenetic probes. Yasuda R, Augustine GJ.
  • Methods. 2008 Nov;46(3):167-76. Epub 2008 Oct 16. Live cell imaging of phosphoinositides with expressed inositide binding protein domains. V¦Árnai P, Balla T.
  • Am J Physiol Cell Physiol. 2008 Dec;295(6):C1579-89. Epub 2008 Oct 15. Mechanosensing machinery for cells under low substratum rigidity. Wei WC, Lin HH, Shen MR, Tang MJ.
  • Curr Pharm Biotechnol. 2008 Oct;9(5):411-20. Single molecule studies of multiple-fluorophore labeled antibodies. Effect of homo-FRET on the number of photons available before photobleaching. Luchowski R, Matveeva EG, Gryczynski I, Terpetschnig EA, Patsenker L, Laczko G, Borejdo J, Gryczynski Z.
  • Anal Bioanal Chem. 2009 Feb;393(4):1143-9. Epub 2008 Oct 10. Experimental and theoretical studies of the optimisation of fluorescence from near-infrared dye-doped silica nanoparticles.
  • Anal Biochem. 2009 Jan 1;384(1):49-55. Epub 2008 Sep 17. A homogeneous time-resolved fluorescence resonance energy transfer assay for phosphatidylserine exposure on apoptotic cells. Gasser JP, Hehl M, Millward TA.
  • Biochem Soc Trans. 2008 Oct;36(Pt 5):1017-21. Quantum dots for single-pair fluorescence resonance energy transfer in membrane- integrated EFoF1. Galvez E, Dόser M, B¦Õrsch M, Wrachtrup J, Gr¦Äber P.
  • Photochem Photobiol. 2009 Jan-Feb;85(1):287-97. Epub 2008 Aug 27. Quantitative FRET analysis with the EGFP-mCherry fluorescent protein pair. Albertazzi L, Arosio D, Marchetti L, Ricci F, Beltram F.
  • Chemphyschem. 2008 Sep 15;9(13):1867-74. Efficient photoconversion distorts the fluorescence lifetime of GFP in confocal microscopy: a model kinetic study on mutant Thr203Val. Jung G, Werner M, Schneider M.
  • Nat Biotechnol. 2008 Sep;26(9):1035-40. Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy.
  • Chem Phys Lipids. 2009 Feb;157(2):61-77. Epub 2008 Aug 3. Membrane lipid domains and rafts: current applications of fluorescence lifetime spectroscopy and imaging. de Almeida RF, Loura LM, Prieto M.   
  • Neuroscience. 2008 Oct 2;156(2):344-52. Epub 2008 Jul 25. Interaction assays in yeast and cultured cells confirm known and identify novel partners of the synaptic vesicle protein synaptophysin. Felkl M, Leube RE.
  • J Biol Chem. 2008 Oct 24;283(43):28934-43. Epub 2008 Aug 13. A parasite cysteine protease is key to host protein degradation and iron acquisition. O'Brien TC, Mackey ZB, Fetter RD, Choe Y, O'Donoghue AJ, Zhou M, Craik CS, Caffrey CR, McKerrow JH.
  • Assay Drug Dev Technol. 2008 Aug;6(4):519-29. Cellular LanthaScreen and beta-lactamase reporter assays for high-throughput screening of JAK2 inhibitors. Robers MB, Machleidt T, Carlson CB, Bi K.
  • Int J Nanomedicine. 2008;3(2):151-67. Potential clinical applications of quantum dots. Medintz IL, Mattoussi H, Clapp AR.
  • Biochim Biophys Acta. 2008 Nov;1778(11):2555-63. Epub 2008 Jul 17. Dimerization in the absence of higher-order oligomerization of the G protein-coupled secretin receptor. Harikumar KG, Happs RM, Miller LJ.
  • Langmuir. 2008 Sep 2;24(17):9727-38. Epub 2008 Jul 29. Directed self-assembly in laponite/CdSe/polyaniline nanocomposites. Kehlbeck JD, Hagerman ME, Cohen BD, Eliseo J, Fox M, Hoek W, Karlin D, Leibner E, Nagle E, Nolan M, Schaefer I, Toney A, Topka M, Uluski R, Wood C.
  • Annu Rev Biomed Eng. 2008;10:1-38. Fluorescence proteins, live-cell imaging, and mechanobiology: seeing is believing. Wang Y, Shyy JY, Chien S.
  • J Cell Biol. 2008 Jul 28;182(2):367-79. Epub 2008 Jul 21. Membrane heterogeneities in the formation of B cell receptor-Lyn kinase microclusters and the immune synapse. Sohn HW, Tolar P, Pierce SK.
  • J Microsc. 2008 Jul;231(Pt 1):97-104. Fluorescence resonance energy transfer of GFP and YFP by spectral imaging and quantitative acceptor photobleaching. Dinant C, van Royen ME, Vermeulen W, Houtsmuller AB.
  • Cytometry A. 2008 Aug;73(8):681-4. Dissecting interacting molecular populations by FRET. V¦Ámosi G, Damjanovich S, Sz¦Õllosi J.
  • Chem Commun (Camb). 2008 Aug 7;(29):3387-9. Epub 2008 May 23. FRET-based sensor for imaging chromium(III) in living cells. Zhou Z, Yu M, Yang H, Huang K, Li F, Yi T, Huang C.
  • Biochem Soc Trans. 2008 Aug;36(Pt 4):738-44. Red light, green light: probing single molecules using alternating-laser excitation. Santoso Y, Hwang LC, Le Reste L, Kapanidis AN.
  • Free Radic Biol Med. 2008 Oct 1;45(7):971-81. Epub 2008 Jun 27. A FRET-based method to study protein thiol oxidation in histological preparations. Mastroberardino PG, Orr AL, Hu X, Na HM, Greenamyre JT.
  • Mol Vis. 2008 Jul 10;14:1282-7. Protein-protein interactions between lens vimentin and alphaB-crystallin using FRET acceptor photobleaching. Song S, Hanson MJ, Liu BF, Chylack LT, Liang JJ.   
  • J Biomed Opt. 2008 May-Jun;13(3):031220. Nonlinear optical imaging and spectral-lifetime computational analysis of endogenous and exogenous fluorophores in breast cancer. Provenzano PP, Rueden CT, Trier SM, Yan L, Ponik SM, Inman DR, Keely PJ, Eliceiri KW.
  • J Biomed Opt. 2008 May-Jun;13(3):031219. Nonlinear scaling analysis of glucose metabolism in normal and cancer cells. Ramanujan VK, Herman BA.
  • J Biomed Opt. 2008 May-Jun;13(3):031218. Effect of refractive index on the fluorescence lifetime of green fluorescent protein. Tregidgo C, Levitt JA, Suhling K.
  • J Biomed Opt. 2008 May-Jun;13(3):031212. Probing dimerization and intraprotein fluorescence resonance energy transfer in a far-red fluorescent protein from the sea anemone Heteractis crispa. Lessard GA, Habuchi S, Werner JH, Goodwin PM, De Schryver F, Hofkens J, Cotlet M.
  • J Biomed Opt. 2008 May-Jun;13(3):031210. Quantum dots as fluorescence resonance energy transfer donors in cells. McGrath N, Barroso M.
  • J Biomed Opt. 2008 May-Jun;13(3):031205. Prolonged irradiation of enhanced cyan fluorescent protein or Cerulean can invalidate Forster resonance energy transfer measurements. Hoffmann B, Zimmer T, Kl¦Õcker N, Kelbauskas L, K¦Õnig K, Benndorf K, Biskup C.
  • J Biomed Opt. 2008 May-Jun;13(3):031204. Energy migration alters the fluorescence lifetime of Cerulean: implications for fluorescence lifetime imaging Forster resonance energy transfer measurements. Koushik SV, Vogel SS.
  • J Biomed Opt. 2008 May-Jun;13(3):031203. Characterization of an improved donor fluorescent protein for Forster resonance energy transfer microscopy. Day RN, Booker CF, Periasamy A.
  • J Biomed Opt. 2008 May-Jun;13(3):031202. Fluorescent protein tools for studying protein dynamics in living cells: a review. Day RN, Schaufele F.
  • J Biomed Opt. 2008 May-Jun;13(3):031201. Visible fluorescent proteins. Periasamy A, Diaspro A.
  • Ann N Y Acad Sci. 2008;1130:188-200. Photon upconversion in homogeneous fluorescence-based bioanalytical assays. Soukka T, Rantanen T, Kuningas K.
  • Ann N Y Acad Sci. 2008;1130:62-7. Toward single-metal-ion sensing by F¦Õrster resonance energy transfer. Sutter JU, Macmillan AM, Birch DJ, Rolinski OJ.
  • Langmuir. 2008 Aug 5;24(15):8181-6. Epub 2008 Jul 1. Langmuir-Blodgett thin films of quantum dots: synthesis, surface modification, and fluorescence resonance energy transfer (FRET) studies. Gole A, Jana NR, Selvan ST, Ying JY.
  • Methods. 2008 Jul;45(3):223-6. Epub 2008 Jun 27. Fluorescence imaging using a fluorescent protein with a large Stokes shift. Kogure T, Kawano H, Abe Y, Miyawaki A.  
  • Methods. 2008 Jul;45(3):214-8. Epub 2008 Jun 27. Combining protein complementation assays with resonance energy transfer to detect multipartner protein complexes in living cells. Rebois RV, Robitaille M, P¦Étrin D, Zylbergold P, Trieu P, H¦Ébert TE.
  • Biophys J. 2008 Sep 15;95(6):2976-88. Epub 2008 Jun 6. Quantitative FRET analysis by fast acquisition time domain FLIM at high spatial resolution in living cells. Padilla-Parra S, Audug¦É N, Coppey-Moisan M, Tramier M
  • PLoS One. 2008 Jun 4;3(6):e2367. Introducing spatial information into predictive NF-kappaB modelling--an agent-based approach. Pogson M, Holcombe M, Smallwood R, Qwarnstrom E.
  • Nat Methods. 2008 Jun;5(6):472-3. Turning fluorescent proteins into energy-saving light bulbs. Kremers GJ, Piston DW.
  • J Phys Chem B. 2008 Jun 19;112(24):7308-14. Epub 2008 May 21. Distribution analysis for single molecule FRET measurement. Okamoto K, Terazima M.
  • Int J Biochem Cell Biol. 2008;40(11):2397-409. Epub 2008 Apr 14. Adhesion dynamics: mechanisms and measurements. Worth DC, Parsons M.
  • J Nanosci Nanotechnol. 2008 Mar;8(3):1019-51. Nanoparticle fluorescence based technology for biological applications. Chen W.
  • Chembiochem. 2008 Jun 16;9(9):1379-84. Contribution of fluorophores to protein kinase C FRET probe performance. Jost CA, Reither G, Hoffmann C, Schultz C.
  • Nature. 2008 Apr 17;452(7189):901-4. Nanotechnology: could it be a small world after all? Blow N.
  • Annu Rev Biochem. 2008;77:101-25. Single-molecule studies of protein folding. Borgia A, Williams PM, Clarke J.
  • Langmuir. 2008 May 20;24(10):5514-20. Epub 2008 Apr 16. Multidentate surface ligand exchange for the immobilization of CdSe/ZnS quantum dots and surface quantum dot-oligonucleotide conjugates. Algar WR, Krull UJ.
  • Curr Opin Microbiol. 2008 Apr;11(2):141-7. Epub 2008 Apr 8. Rate and accuracy of bacterial protein synthesis revisited. Johansson M, Lovmar M, Ehrenberg M.
  • Methods. 2008 Apr;44(4):299-303. Visualizing interaction of proteins relevant to Alzheimer's disease in intact cells. Thomas AV, Berezovska O, Hyman BT, von Arnim CA.
  • Curr Protoc Cell Biol. 2008 Mar;Chapter 21:Unit 21.6. Photoactivation and imaging of photoactivatable fluorescent proteins. Patterson GH.   
  • Biophys J. 2008 Jul;95(1):378-89. Epub 2008 Mar 21. Quantitative lifetime unmixing of multiexponentially decaying fluorophores using single-frequency fluorescence lifetime imaging microscopy. Kremers GJ, van Munster EB, Goedhart J, Gadella TW Jr.
  • Org Lett. 2008 Apr 17;10(8):1581-4. Epub 2008 Mar 21. Phenanthrene-fused boron-dipyrromethenes as bright long-wavelength fluorophores. Descalzo AB, Xu HJ, Xue ZL, Hoffmann K, Shen Z, Weller MG, You XZ, Rurack K.
  • Nat Methods. 2008 Apr;5(4):339-45. Epub 2008 Mar 16. Direct measurement of protein dynamics inside cells using a rationally designed photoconvertible protein. Matsuda T, Miyawaki A, Nagai T.
  • Cytometry A. 2008 May;73(5):442-50. High throughput FRET screening of the plasma membrane based on TIRFM. Paar C, Paster W, Stockinger H, Schόtz GJ, Sonnleitner M, Sonnleitner A.
  • Biophys J. 2008 Jul;95(1):400-18. Epub 2008 Mar 13. Three-dimensional FRET reconstruction microscopy for analysis of dynamic molecular interactions in live cells. Hoppe AD, Shorte SL, Swanson JA, Heintzmann R.
  • J Fluoresc. 2008 May-Jul;18(3-4):727-32. Epub 2008 Mar 12. Interaction among cadmium sulfide nanoparticles, acridine orange, and deoxyribonucleic acid in fluorescence spectra and a method for deoxyribonucleic acid determination. Mao J, Lai S, Chang X, Liu W.
  • Acta Biomater. 2008 Jul;4(4):791-8. Epub 2008 Feb 2. Quantum-dot-assisted fluorescence resonance energy transfer approach for intracellular trafficking of chitosan/DNA complex. Lee JI, Ha KS, Yoo HS.
  • BMC Biol. 2008 Mar 6;6:13. Hue-shifted monomeric variants of Clavularia cyan fluorescent protein: identification of the molecular determinants of color and applications in fluorescence imaging. Ai HW, Olenych SG, Wong P, Davidson MW, Campbell RE.
  • J Biomed Opt. 2008 Jan-Feb;13(1):014023. Decreasing photobleaching by silver nanoparticles on metal surfaces: application to muscle myofibrils. Muthu P, Gryczynski I, Gryczynski Z, Talent JM, Akopova I, Borejdo J.
  • J Biomed Opt. 2008 Jan-Feb;13(1):014008. Two postprocessing techniques for the elimination of background autofluorescence for fluorescence lifetime imaging microscopy. Jones PB, Rozkalne A, Meyer-Luehmann M, Spires-Jones TL, Makarova A, Kumar AT, Berezovska O, Bacskai BB, Hyman BT.
  • Biophys J. 2008 Jun;94(11):4358-69. Epub 2008 Feb 29. Tropomyosin dynamics in cardiac thin filaments: a multisite forster resonance energy transfer and anisotropy study. Wang H, Mao S, Chalovich JM, Marriott G.
  • Biochemistry. 2008 Mar 18;47(11):3564-75. Epub 2008 Feb 26. K+-translocating KdpFABC P-type ATPase from Escherichia coli acts as a functional and structural dimer. Heitkamp T, Kalinowski R, B¦Õttcher B, B¦Õrsch M, Altendorf K, Greie JC.
  • J Neurosci Methods. 2008 May 15;170(1):35-44. Epub 2008 Jan 5. Hardware and methodology for targeting single brain arterioles for photothrombotic stroke on an upright microscope. Sigler A, Goroshkov A, Murphy TH. 
  • Am J Physiol Cell Physiol. 2008 Apr;294(4):C985-93. Epub 2008 Feb 20. Role of extracellular superoxide in neutrophil activation: interactions between xanthine oxidase and TLR4 induce proinflammatory cytokine production. Lorne E, Zmijewski JW, Zhao X, Liu G, Tsuruta Y, Park YJ, Dupont H, Abraham E.
  • Trends Pharmacol Sci. 2008 Mar;29(3):159-65. Epub 2008 Feb 11. Optical techniques to analyze real-time activation and signaling of G-protein-coupled receptors. Lohse MJ, Nikolaev VO, Hein P, Hoffmann C, Vilardaga JP, Bόnemann M.
  • Bioorg Med Chem. 2009 Feb 1;17(3):981-9. Epub 2008 Jan 30. Site-specific covalent labeling of proteins inside live cells using small molecule probes. Chattopadhaya S, Srinivasan R, Yeo DS, Chen GY, Yao SQ.
  • HFSP J. 2008 Feb;2(1):7-11. Epub 2008 Jan 18. Quantitative analysis of fluorescence lifetime imaging made easy. Wouters FS, Esposito A.
  • Mol Ther. 2008 Feb;16(2):324-32. Epub 2008 Jan 8. Quantitative comparison of intracellular unpacking kinetics of polyplexes by a model constructed from quantum dot-FRET.
  • J Microsc. 2008 Jan;229(Pt 1):104-14. Scanning-less wide-field single-photon counting device for fluorescence intensity, lifetime and time-resolved anisotropy imaging microscopy. Spitz JA, Yasukuni R, Sandeau N, Takano M, Vachon JJ, Meallet-Renault R, Pansu RB.
  • Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):151-6. Epub 2008 Jan 2. Visualization of AP-1 NF-kappaB ternary complexes in living cells by using a BiFC-based FRET. Shyu YJ, Suarez CD, Hu CD.
  • Methods Cell Biol. 2008;85:415-30. FRET by fluorescence polarization microscopy. Piston DW, Rizzo MA.
  • Methods Cell Biol. 2008;85:395-414. Fluorescence anisotropy imaging microscopy for homo-FRET in living cells. Tramier M, Coppey-Moisan M.
  • Methods Cell Biol. 2008;85:381-93. Engineering FRET constructs using CFP and YFP. Shimozono S, Miyawaki A.
  • Methods Cell Biol. 2008;85:153-77. Fluorescent protein applications in plants. Berg RH, Beachy RN.
  • Methods Cell Biol. 2008;85:45-61. Fluorescent proteins for photoactivation experiments. Lippincott-Schwartz J, Patterson GH.
  • Cytometry A. 2008 Mar;73(3):209-19. Two-sided fluorescence resonance energy transfer for assessing molecular interactions of up to three distinct species in confocal microscopy. Fazekas Z, Petr¦Ás M, F¦Ábi¦Án A, P¦Ályi-Krekk Z, Nagy P, Damjanovich S, Vereb G, Sz¦Õllosi J.
  • Microsc Res Tech. 2008 Mar;71(3):201-13. A novel fluorescence lifetime imaging system that optimizes photon efficiency. Colyer RA, Lee C, Gratton E.
  • J Biomed Opt. 2009 Nov-Dec;14(6):060502. Physiological fluorescence lifetime imaging microscopy improves F¦Õrster resonance energy transfer detection in living cells.
  • Integr Biol (Camb). 2009 Oct;1(10):565-73. FRET and mechanobiology. Wang Y, Wang N.
  • J Fluoresc. 2010 Mar;20(2):435-40. Epub 2009 Dec 2. Long wavelength fluorescence lifetime standards for front-face fluorometry. McCranor BJ, Thompson RB.
  • Cytometry A. 2009 Dec;75(12):1007-14. Three-dimensional polar representation for multispectral fluorescence lifetime imaging microscopy. Leray A, Spriet C, Trinel D, H¦Éliot L.
  • J Biomed Opt. 2009 Sep-Oct;14(5):054009. Characterization of an orange acceptor fluorescent protein for sensitized spectral fluorescence resonance energy transfer microscopy using a white-light laser. Sun Y, Booker CF, Kumari S, Day RN, Davidson M, Periasamy A.
  • J Vis Exp. 2009 Nov 2;(33). pii: 1542. doi: 10.3791/1542. Automated system for single molecule fluorescence measurements of surface-immobilized biomolecules. Di Fiori N, Meller A.
  • Biophys J. 2009 Nov 4;97(9):2613-22. Homo-FRET imaging enables quantification of protein cluster sizes with subcellular resolution. Bader AN, Hofman EG, Voortman J, en Henegouwen PM, Gerritsen HC.
  • Biophys J. 2009 Oct 21;97(8):2368-76. Quantitative comparison of different fluorescent protein couples for fast FRET-FLIM acquisition. Padilla-Parra S, Audug¦É N, Lalucque H, Mevel JC, Coppey-Moisan M, Tramier M.
  • Proteomics. 2009 Dec;9(23):5371-83. A computational approach to inferring cellular protein-binding affinities from quantitative fluorescence resonance energy transfer imaging. Mehta K, Hoppe AD, Kainkaryam R, Woolf PJ, Linderman JJ.\
  • Angew Chem Int Ed Engl. 2009;48(47):8870-3. DNA origami as a nanoscopic ruler for super-resolution microscopy. Steinhauer C, Jungmann R, Sobey TL, Simmel FC, Tinnefeld P.
  • PLoS One. 2009 Oct 12;4(10):e7338. F¦Õrster resonance energy transfer measurements of ryanodine receptor type 1 structure using a novel site-specific labeling method. Fessenden JD.
  • J Biomech. 2010 Jan 5;43(1):45-54. Epub 2009 Oct 12. Combining mechanical and optical approaches to dissect cellular mechanobiology. Sen S, Kumar S.
  • Chem Soc Rev. 2009 Oct;38(10):2842-51. Epub 2009 Aug 4. The photochemistry of fluorescent proteins: implications for their biological applications. Seward HE, Bagshaw CR.
  • Methods Mol Biol. 2009;586:117-42. Quantitative fluorescence microscopy techniques. Esposito A, Schlachter S, Schierle GS, Elder AD, Diaspro A, Wouters FS, Kaminski CF, Iliev AI.   
  • Methods Mol Biol. 2009;571:371-83. Monitoring dynamic GPCR signaling events using fluorescence microscopy, FRET imaging, and single-molecule imaging. Xu X, Brzostowski JA, Jin T.
  • J Biomed Opt. 2009 Jul-Aug;14(4):044035. Fluorescence lifetime imaging microscopy and fluorescence resonance energy transfer from cyan to yellow fluorescent protein validates a novel method to cluster proteins on solid surfaces. Madeira C, Estrela N, Ferreira JA, Andrade SM, Costa SM, Melo EP.
  • J Biomed Opt. 2009 Jul-Aug;14(4):040502. Probing cell surface interactions using atomic force microscope cantilevers functionalized for quantum dot-enabled Forster resonance energy transfer. Sun Z, Juriani A, Meininger GA, Meissner KE.
  • Mol Pharm. 2009 Mar-Apr;6(2):416-27. Activatable molecular systems using homologous near-infrared fluorescent probes for monitoring enzyme activities in vitro, in cellulo, and in vivo. Zhang Z, Fan J, Cheney PP, Berezin MY, Edwards WB, Akers WJ, Shen D, Liang K, Culver JP, Achilefu S.
  • Eur Biophys J. 2010 Jan;39(2):241-53. Epub 2009 Aug 20. Time-resolved FRET fluorescence spectroscopy of visible fluorescent protein pairs. Visser AJ, Laptenok SP, Visser NV, van Hoek A, Birch DJ, Brochon JC, Borst JW.
  • Curr Pharm Biotechnol. 2009 Aug;10(5):559-68. Single-molecule fluorescence studies of nucleosome dynamics. Gurunathan K, Levitus M.
  • Curr Opin Pharmacol. 2009 Oct;9(5):650-6. Epub 2009 Aug 13. Image-free assessment of protein translocation in live cells. Furger C, Derick S, Boutin JA, Nosjean O.
  • Pflugers Arch. 2009 Nov;459(1):227-34. Epub 2009 Aug 13. A technique for monitoring multiple signals with a combination of prism-based total internal reflection fluorescence microscopy and epifluorescence microscopy. Adachi E, Kazoe Y, Sato Y, Suzuki Y, Urano T, Ueyama T, Saito N, Nikolaev VO, Lohse MJ, Tominaga M, Mogami H.
  • Structure. 2009 Aug 12;17(8):1035-6. How do adhesion proteins stick? Weninger K.
  • Opt Express. 2009 Aug 3;17(16):13737-46. Multifarious control of two-photon excitation of multiple fluorophores achieved by phase modulation of ultra-broadband laser pulses. Isobe K, Suda A, Tanaka M, Kannari F, Kawano H, Mizuno H, Miyawaki A, Midorikawa K.
  • J Opt Soc Am A Opt Image Sci Vis. 2009 Aug;26(8):1805-13. Towards in vivo imaging of intramolecular fluorescence resonance energy transfer parameters. Gaind V, Webb KJ, Kularatne S, Bouman CA.
  • Micron. 2009 Dec;40(8):811-20. Epub 2009 Jul 23. Quantitative analysis of caspase-3 activation by fitting fluorescence emission spectra in living cells. Wang L, Chen T, Qu J, Wei X.
  • Nano Lett. 2009 Aug;9(8):3066-71. FRET enhancement in multilayer core-shell nanoparticles. Lessard-Viger M, Rioux M, Rainville L, Boudreau D.
  • Cytometry A. 2009 Sep;75(9):761-7. Evaluation of intensity-based ratiometric FRET in image cytometry--approaches and a software solution. Roszik J, Lisboa D, Sz¦Õllosi J, Vereb G.  
  • J Fluoresc. 2010 Jan;20(1):27-35. Epub 2009 Jul 9. Photobleaching-based quantitative analysis of fluorescence resonance energy transfer inside single living cell. Wang L, Chen T, Qu J, Wei X.
  • Biophys J. 2009 Jul 8;97(1):195-204. spFRET using alternating excitation and FCS reveals progressive DNA unwrapping in nucleosomes. Koopmans WJ, Buning R, Schmidt T, van Noort J.
  • J Biomed Opt. 2009 May-Jun;14(3):034039. Enhanced yellow fluorescent protein photoconversion to a cyan fluorescent protein-like species is sensitive to thermal and diffusion conditions. Raarup MK, Fjorback AW, Jensen SM, Mόller HK, Kjaergaard MM, Poulsen H, Wiborg O, Nyengaard JR.
  • Analyst. 2009 Jul;134(7):1348-54. Epub 2009 Apr 1. Ultrasensitive Pb2+ detection based on fluorescence resonance energy transfer (FRET) between quantum dots and gold nanoparticles. Wang X, Guo X.
  • J Biosci. 2009 Jun;34(2):169-72. Green fluorescent protein: a molecular lantern that illuminates the cellular interior. Haldar S, Chattopadhyay A.
  • Curr Top Microbiol Immunol. 2009;334:31-46. Visualizing intermolecular interactions in T cells. Gascoigne NR, Ampudia J, Clamme JP, Fu G, Lotz C, Mallaun M, Niederberger N, Palmer E, Rybakin V, Yachi PP, Zal T.
  • Methods Mol Biol. 2009;544:451-60. Single-molecule imaging of fluorescent proteins expressed in living cells. Hibino K, Hiroshima M, Takahashi M, Sako Y.
  • Methods Mol Biol. 2009;544:29-42. A single-molecule barcoding system using nanoslits for DNA analysis : nanocoding. Jo K, Schramm TM, Schwartz DC.
  • Phys Chem Chem Phys. 2009 Jun 7;11(21):4403-9. Epub 2009 Mar 26. Quantitative study of the gold-enhanced fluorescence of CdSe/ZnS nanocrystals as a function of distance using an AFM probe. Lee SY, Nakaya K, Hayashi T, Hara M.
  • Methods. 2009 Oct;49(2):112-7. Epub 2009 May 4. RNA folding dynamics by single-molecule fluorescence resonance energy transfer. Zhao R, Rueda D.
  • J Biomed Opt. 2009 Mar-Apr;14(2):024043. Ultrasound-modulated fluorescence based on a fluorophore-quencher-labeled microbubble system. Yuan B.
  • J Biomed Opt. 2009 Mar-Apr;14(2):021003. Forster resonance energy transfer-based total internal reflection fluorescence reader for apoptosis. Bruns T, Angres B, Steuer H, Weber P, Wagner M, Schneckenburger H.
  • Methods Mol Biol. 2009;517:33-54. Toll-like receptor interactions imaged by FRET microscopy and GFP fragment reconstitution. Horvath G, Young S, Latz E.
  • Langmuir. 2009 Jun 16;25(12):7019-24. FRET pair printing of fluorescent proteins. Escalante M, Blum C, Cesa Y, Otto C, Subramaniam V. 
  • Curr Protoc Protein Sci. 2009 Apr;Chapter 19:Unit19.5. Imaging protein-protein interactions by F¦Õrster resonance energy transfer (FRET) microscopy in live cells. Brzostowski JA, Meckel T, Hong J, Chen A, Jin T.
  • Opt Express. 2009 Apr 13;17(8):6493-508. Global analysis of time correlated single photon counting FRET-FLIM data. Grecco HE, Roda-Navarro P, Verveer PJ.
  • Anal Chem. 2009 May 15;81(10):4113-20. Toward a multiplexed solid-phase nucleic acid hybridization assay using quantum dots as donors in fluorescence resonance energy transfer. Algar WR, Krull UJ.
  • Photochem Photobiol Sci. 2009 Apr;8(4):470-80. Epub 2009 Mar 6. Multiparameter fluorescence image spectroscopy to study molecular interactions. Weidtkamp-Peters S, Felekyan S, Bleckmann A, Simon R, Becker W, Kόhnemuth R, Seidel CA.
  • BMC Biotechnol. 2009 Mar 25;9:24. Practical and reliable FRET/FLIM pair of fluorescent proteins. Shcherbo D, Souslova EA, Goedhart J, Chepurnykh TV, Gaintzeva A, Shemiakina II, Gadella TW, Lukyanov S, Chudakov DM.
  • J Am Chem Soc. 2009 Apr 1;131(12):4245-52. Single-chromophore-based photoswitchable nanoparticles enable dual-alternating-color fluorescence for unambiguous live cell imaging. Tian Z, Wu W, Wan W, Li AD.
  • Curr Opin Biotechnol. 2009 Feb;20(1):28-36. Epub 2009 Mar 4. Fluorescence lifetime and polarization-resolved imaging in cell biology. Levitt JA, Matthews DR, Ameer-Beg SM, Suhling K.
  • Int J Dev Biol. 2009;53(8-10):1569-79. Frontiers in fluorescence microscopy. Rino J, Braga J, Henriques R, Carmo-Fonseca M.
  • Anal Bioanal Chem. 2009 May;394(1):47-59. Epub 2009 Feb 17. Nanomaterials in fluorescence-based biosensing. Zhong W.
  • PLoS One. 2009;4(2):e4418. Epub 2009 Feb 9. Spectral unmixing: analysis of performance in the olfactory bulb in vivo. Ducros M, Moreaux L, Bradley J, Tiret P, Griesbeck O, Charpak S.
  • J Microsc. 2009 Jan;233(1):192-204. Robust approaches to quantitative ratiometric FRET imaging of CFP/YFP fluorophores under confocal microscopy. Tadross MR, Park SA, Veeramani B, Yue DT.
  • Methods Mol Biol. 2009;462:307-43. Revealing signaling in single cells by single- and two-photon fluorescence lifetime imaging microscopy. Alcor D, Calleja V, Larijani B.
  • Methods Mol Biol. 2009;490:311-37. Single-molecule fluorescence studies of protein folding. Nienhaus GU.
  • Appl Opt. 2009 Jan 20;48(3):553-9. Time-gated total internal reflection fluorescence microscopy with a supercontinuum excitation source. Blandin P, L¦Év¦Êque-Fort S, L¦Écart S, Cossec JC, Potier MC, Lenkei Z, Druon F, Georges P.
  • Cell Microbiol. 2009 Apr;11(4):531-9. Mathematical and computational approaches can complement experimental studies of host-pathogen interactions. Kirschner DE, Linderman JJ. 
  • Microsc Res Tech. 2009 May;72(5):371-9. Optimized protocol of a frequency domain fluorescence lifetime imaging microscope for FRET measurements. Leray A, Riquet FB, Richard E, Spriet C, Trinel D, H¦Éliot L.
  • Methods Mol Biol. 2009;479:203-15. Fluorescence cross-correlation spectroscopy of plant proteins. Muto H, Kinjo M, Yamamoto KT.
  • Methods Mol Biol. 2009;493:369-79. Fluorescence microscopy methods in the study of protein structure and function. Jensen-Smith H, Currall B, Rossino D, Tiede L, Nichols M, Hallworth R.
  • Microsc Res Tech. 2009 Jan;72(1):1-11. Novel lambda FRET spectral confocal microscopy imaging method. Meg¦Ías D, Marrero R, Mart¦Ínez Del Peso B, Garc¦Ía MA, Bravo-Cordero JJ, Garc¦Ía-Grande A, Santos A, Montoya MC.